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Amarnath Gupta 6076 Roselle
Meadows Trail, San Diego, CA 92130 (858) 259-9693 gupta@sdsc.edu |
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CURRENT POSITION |
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Director,
Advanced Query Processing Laboratory, Science R&D Division Research
Scientist |
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Education |
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Ph.D.
(Engineering) in Computer Science |
1994 |
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Research Area: Database Management |
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M.S. in
Biomedical Engineering |
1987 |
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Research Area: Automatic Gait Analysis |
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Indian |
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B.Tech. Honors in
Mechanical Engineering |
1984 |
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Undergraduate Research: Robot Vision |
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Current RESEARCH INTERESTS |
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Information
and Knowledge Modeling for Biomedical Sciences |
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Information Integration for Scientific Domains |
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Graph Data Management |
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Management and Utilization of Ontological Information Multimedia Data Management |
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RESEARCH Experience |
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San Diego
Supercomputer Center, Univ. of California San Diego |
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Research
Scientist |
2007-current |
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Development
of Ontology Management Tools over Integrated Ontology Sources for
Neurosciences Management
of Event Information in Multimedia and Scientific Information Systems Query
Processing on Directed Graphs and Applications |
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Associate Research Scientist |
2001-2007 |
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Design
of a Type-Extensible, Ontology-Enabled Mediator Design,
Implementation and Deployment of Information Integration System for multiple
Neuroscience Databases Design
and Development of Graph Data Warehouse for Gene Regulatory and Metabolic
Networks Development of specialized query languages and engines
for Complex Data Types used in multiple scientific disciplines |
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Assistant
Research Scientist |
1998-2001 |
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Techniques
for preservation of software-dependent digital objects Techniques
for information integration of spatial data from distributed data sources Developed
query-translation techniques from Datalog-like query languages to specialized
data sources like Oracle Spatial, and ArcXML |
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Virage,
Inc., San Mateo, California |
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Research
Scientist |
1995 - 1998 |
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Development
of image and video query engine Development
of techniques for searching and combining multiple media data Development
of multimedia searching applications in the areas of histopathology,
radiology and trademarks 8
patents |
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Indian
Statistical Institute, Calcutta, India |
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Computer
Engineer |
1988-1994 |
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Developed
a Classificatory Data Model for Retrieval and Post-Analysis of Archaeological
Artifacts with an Image Database Developed
an Expert Image Database Engine for Machine Fault Diagnosis from Ferrogram
Images Developed
an Industrial Object Model Database Engine for Computer Vision Developed
a Semantic Network Based Data and Indexing Method for primary and secondary
memory Developed
a Method for Information Retrieval using automated Handwritten Document
Analysis |
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TEACHING Experience |
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Lectures in Process Modeling for Advanced Topics in CSE Faculty Research Seminar, Computer Science Neuroinformatics Seminar Multimedia Systems |
2004 2003, 2004 2003 2001 |
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Indian Statistical Institute |
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Graduate Courses in Database Systems, Software
Engineering, Compiler Construction, Image Processing |
1988 - 1994 |
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GRANTS |
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Title
of Proposal: Web Based Information Technologies Proposal to the
Federal Web Consortium Granting
Agency: National Science Foundation Time
Period of Grant/Contract: 4/1/98-7/31/99 Amount
of Award: $175,000 Title
of Proposal: Digital Government:
Web Based Information Technologies: Advancing Federal Information
Infrastructures Granting
Agency: National Science Foundation Time
Period of Grant/Contract: 08/01/99 – 07/31/02 Amount
of Award: $199,970 Title
of Proposal: Methodologies for Preservation and Access of
Software-dependent Electronic Records Granting
Agency: National Historical Publications and Records
Commission, National Archives and Records Administration Time
Period of Grant/Contract: 1/1/00 – 12/31/02 Amount
of Award: $300,000 Title
of Proposal: I2T: An Information Integration Testbed for Digital
Government Granting
Agency: National Science Foundation Time
Period of Grant/Contract: 07/01/2000 – 06/30/2003 Amount
of Award: $750,000 Title
of Proposal: Structured Analysis of the Retina Granting
Agency: National Institutes of Health Time
Period of Grant/Contract: 07/01/2000 – 06/30/2003 Amount
of Award: $54,784 (SDSC Direct) Title
of Proposal: Evaluating Information Integration Architectures for a
National Statistical Data Infrastructure Granting
Agency: National Science Foundation Time
Period of Grant/Contract: 10/01/1999 – 06/30/2000 Amount
of Award: $45,000 Title
of Proposal: Causes of Robustness and Vulnerability in
Real-world Networks: Lessons in Biology Granting
Agency: National Science Foundation Time
Period of Grant/Contract: 09/15/2001 – 09/14/2003 Amount
of Award: $32,501 annual (SDSC Direct) Title
of Proposal: NBCR Supplement: Biomedical Informatics Research
Network- Coordinating Center Granting
Agency: NCRR, National Institutes of Health Time
Period of Grant/Contract: 04/30/2001 – 03/31/2004 Amount
of Award: $1,761,373 (SDSC Direct) – 25% is for Data Integration Title
of Proposal: ITR: A Twin
Framework to Analyze, Model and Design Robust, Complex Networks Using
Biological and Computatational Principles Granting
Agency: National Science Foundation Time
Period of Grant/Contract: 10/01/2002 – 09/30/2006 Amount
of Award: $216,723 annual (SDSC Direct) Title
of Proposal: NPACI Neuroscience Thrust: Federation of Brain Data Granting
Agency: National Science Foundation Time
Period of Grant/Contract: 10/01/2002 – 09/30/2004 Amount
of Award: $100,000 annual (SDSC Direct) Title
of Proposal: Development of a 3D Cell-Centered Neuronal Database Granting
Agency: NIDA, National Institutes of Health Time
Period of Grant/Contract: 4/1/2003 – 3/31/2008 Amount
of Award: $3,397,213 – 33% is for Data Model Development Title
of Proposal: Biomedical Informatics Research Network - Coordinating
Center Granting
Agency: NCRR, National Institutes of Health Time
Period of Grant/Contract: 5/1/2004-4/30/2009 Amount
of Award: ~ $5M – 20% for Data Integration Title
of Proposal: National Biomedical Computational Center Granting
Agency: NCRR, National Institutes of Health Time
Period of Grant/Contract: 10/01/2004 – 09/30/2009 Amount
of Award: $100,000 annual Title
of Proposal: Toward a distributed information system for marine
biology and limnology Granting
Agency: Gordon and Betty Moore Foundation Time
Period of Grant/Contract: 10/15/2004 – 6/14/2008 Amount
of Award: $1,762,420.00 Title
of Proposal: The Neuroscience Information Resource Granting
Agency: NIH/NIDA Time
Period of Grant/Contract: 10/01/2008 – 9/30/2013 Amount
of Award: $10M Title
of Proposal: BiologicalNetworks Granting
Agency: NIH?NIGMS Time
Period of Grant/Contract: 09/01/2008 – 6/14/2012 Amount
of Award: $1,762,420.00 |
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Publications |
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See
web site |
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Memberships |
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Association
of Computing Machinery NIH
Biomedical Informatics Research Network Ontology Task Force Society
for Neuroscience, Neuroinformatics Committee |
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